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Not to mention no qualms about killing people to take their land. NCR - Uses democracy because they believe each citizen deserves to be free but it's filled with corruption where the rich take advantage of the poor. Ya you can colonize other stars because you built a theme park for the NCR. I also think Mr House is bad because he is the manifestation of stagnation.
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Caesar's entire speech is just an armchair philosophy of "the end justifies the means" or something The legion are also hypocrites where they complain about people having bad morals but regularly use subversion to destroy their enemies and act like a barbarian organization. Caesar is a guy who has no remorse to any of his followers and sees them as disposable tools where his entire strategy is just to herd them and throw them at the enemy. The Legion regularly does atrocities to random people or just to people who were on the wrong side like the NCR. The legion on the other hand are the most evil faction in the entire game of Fallout New Vegas. The Independent ending has some negative effect for groups like the Followers of the Apocalypse but so actually in the long run it allows the region to develop its own indepedent culture and strength. The NCR apologizes and feels shame actually over the mistakes they make like Bitter Springs, as with any large entity they are prone to corruption but the positives outweigh the negatives geneally. The NCR isn't perfect but that doesn't mean they're neutral or bad.
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The two bad routes are Mr House and the Legion The two good routes are the NCR and Independent. I would say they're just more fleshed out as entities in the gameworld.
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